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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Xcl1, chemokine (C motif) ligand 1
Sequence ID:NM_008510
Entrez Gene ID:16963
Ensembl ID:ENSMUSG00000026573

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 H2.2|1 87.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 164931649 - 164935522

NM_008510 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1306166861778166862083
307421166863025166863139
422502166865560166865640

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3974601Full LengthBC062249chemokine (C motif) ligand 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032536  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008510 NP_032536 P47993
Q542T1
IL8

Related Sequences

 
mRNAGenPeptSwissProt
U15607 AAA56752 P47993
BC062249 AAH62249 P47993
Q542T1
D43769 BAA07826 P47993
Q542T1
AK079820 BAC37756 P47993
Q542T1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Xcl1 NP_032536 R.norvegicus Xcl1 171371   NP_599188 82
H.sapiens XCL1 6375 Gene Info NP_002986 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)