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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ctnna1, catenin (cadherin associated protein), alpha 1
Sequence ID:NM_009818
Entrez Gene ID:12385
Ensembl ID:ENSMUSG00000037815

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18 B1|18 11.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:18: 35118954 - 35254773

 Exon Info From UCSC:
NM_009818

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3967124Full LengthBC105576catenin (cadherin associated protein), alpha 1
6418358Full LengthBC048163catenin (cadherin associated protein), alpha 1
30106659Full LengthBC068316catenin (cadherin associated protein), alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033948  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009818 NP_033948 Q545R0
P26231
Vinculin

Related Sequences

 
mRNAGenPeptSwissProt
BC048163 AAH48163 Q545R0
P26231
BC068316 AAH68316 Q6NV50
BC105576 AAI05577 Q545R0
D90362 BAA14376 Q545R0
P26231
AK004623 BAB23418 Q545R0
P26231
AK148496 BAE28588 Q545R0
P26231
AK159339 BAE35001 Q545R0
P26231
AK168635 BAE40495 Q3TGQ3
X59990 CAA42607 Q545R0
P26231

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ctnna1 NP_033948 H.sapiens CTNNA1 1495 Gene Info NP_001894 99
R.norvegicus Ctnna1 307505   NP_001007146 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta