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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Stx18, syntaxin 18
Sequence ID:NM_026959
Entrez Gene ID:71116
Ensembl ID:ENSMUSG00000029125

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 B3|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 38039232 - 38136817

 Exon Info From UCSC:
NM_026959

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5035350Full LengthBC021362syntaxin 18

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026959 NP_081235 Q8VDS8  

Related Sequences

 
mRNAGenPeptSwissProt
BC021362 AAH21362 Q8VDS8
AK007700 BAB25198 Q8VDS8
AK169273 BAE41033 Q8VDS8
AK170165 BAE41611 Q8VDS8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Stx18 NP_081235 R.norvegicus Stx18 360953   NP_001012151 96
H.sapiens STX18 53407 Gene Info NP_058626 93
D.melanogaster Syx18 42933   NP_524485 39
A.gambiae AgaP_AGAP011160 1270769   XP_309489 37
A.thaliana SYP81 841599   NP_564597 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)