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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cd1d1, CD1d1 antigen
Sequence ID:NM_007639
Entrez Gene ID:12479
Ensembl ID:ENSMUSG00000028076

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F1|3 48.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:3: 86995839 - 86999302

NM_007639 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
37688679975786800522
7698658680061186800707
86611448680125986801537
114514238680199386802271
142416968680255486802826
169718458680311386803261

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4917095Full LengthBC055902CD1d1 antigen

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031665  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007639 NP_031665   C1-set

Related Sequences

 
mRNAGenPeptSwissProt
M63695 AAA37391 P11609
BC055902 AAH55902 Q7TMK5
FJ594117 ACM45456  
AK002582 BAB22206 P11609

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cd1d1 NP_031665 M.musculus Cd1d2 12480 Gene Info NP_031666 94
R.norvegicus Cd1d1 25109   NP_058775 84
H.sapiens CD1D 912 Gene Info NP_001757 63

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)