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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Alyref, Aly/REF export factor
Sequence ID:NM_011568
Entrez Gene ID:21681
Ensembl ID:ENSMUSG00000025134

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 E2|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 120594852 - 120598338

NM_011568 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1352120455829120456180
353527120456293120456467
528591120456568120456631
592739120457233120457380
740871120458948120459079
8721132120459418120459678

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860677Full LengthBC137658THO complex 4
40129511Full LengthBC120588THO complex 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035698  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011568 NP_035698 O08583 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
U89876 AAC53117 O08583
BC120588 AAI20589 O08583
BC137658 AAI37659 O08583
AK035721 BAC29168 O08583
AJ252140 CAB76383 O08583

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Alyref NP_035698 H.sapiens ALYREF 10189 Gene Info NP_005773 97
D.melanogaster Aly 44029   NP_651968 55
A.thaliana AT5G02530 831923   NP_195873 54
A.gambiae AgaP_AGAP006733 1270326   XP_309011 53
A.thaliana AT5G59950 836117   NP_001190572 50
N.crassa NCU07421 3874560   XP_958422 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)