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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rpn1, Ribophorin I
Sequence ID:NM_133933
Entrez Gene ID:103963
Ensembl ID:ENSMUSG00000030062

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6 D1|6 38.0

Chromosomal Position (from UCSC)

Chromosomal Position:6: 88084515 - 88105304

NM_133933 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13228803446688034787
3233878803834388038407
3886948803998288040288
6959048804377988043988
90510978804551688045708
109811978804926788049366
119813368805062288050760
133714568805085588050974
145717028805196888052213
170336428805335888055297

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4489287Full LengthBC016080ribophorin I
3486950IncompleteBC002175ribophorin I
30540251IncompleteBC085483ribophorin I

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_598694  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_133933 NP_598694 Q8BMR3
Q91YQ5
EC 2.4.1.119 Ribophorin_I

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC002175 AAH02175 Q99LY0  
BC016080 AAH16080 Q5RKP4
Q91YQ5
EC 2.4.1.119
BC085483 AAH85483 Q5RKP4
Q91YQ5
EC 2.4.1.119
AK029923 BAC26679 Q8BMR3  
AK052130 BAC34853 Q5RKP4
Q91YQ5
EC 2.4.1.119
AK132750 BAE21332 Q5RKP4
Q91YQ5
EC 2.4.1.119
AK151899 BAE30782 Q5RKP4
Q91YQ5
EC 2.4.1.119
AK152003 BAE30867 Q3U900  
AK153867 BAE32221 Q5RKP4
Q91YQ5
EC 2.4.1.119

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rpn1 NP_598694 H.sapiens RPN1 6184 Gene Info NP_002941 95
A.gambiae AgaP_AGAP010174 1279594   XP_319348 51
D.melanogaster CG33303 2768916   NP_995680 47
C.elegans glycotransferase 177456   NP_501065 42
A.thaliana AT1G76400 843972   NP_177766 37
N.crassa NCU02541 3881806   XP_965672 33
S.cerevisiae OST1 853455   NP_012532 29
S.pombe SPAC27F1.07 2541636   NP_594536 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)