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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Mmp16, matrix metallopeptidase 16
Sequence ID:NM_019724
Entrez Gene ID:17389
Ensembl ID:ENSMUSG00000028226

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 A3|4 3.6 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 17853666 - 18116399

NM_019724 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13711778062817780998
3725201791471817914866
5216431792334017923462
6449481793863717938941
94911101797886817979029
111113221798151317981724
132314611802047618020614
146216121803757418037724
161317281803914518039260
172945761804303318045880

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5292478Full LengthBC057926matrix metallopeptidase 16

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062698  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019724 NP_062698 Q9WTR0 Hemopexin
Peptidase_M10
PG_binding_1

Related Sequences

 
mRNAGenPeptSwissProt
AF282844 AAG17704 Q9WTR0
BC057926 AAH57926 Q9WTR0
AB021228 BAA78420 Q9WTR0
AK034828 BAC28845 Q8BSA6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Mmp16 NP_062698 R.norvegicus Mmp16 65205   NP_542954 99
H.sapiens MMP16 4325 Gene Info NP_005932 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)