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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Trpa1, transient receptor potential cation channel, subfamily A, member 1
Sequence ID:NM_177781
Entrez Gene ID:277328
Ensembl ID:ENSMUSG00000032769

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 A3|1

Chromosomal Position (from UCSC)

Chromosomal Position:1: 14872647 - 14918862

 Exon Info From UCSC:
NM_177781

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40129486Full LengthBC120563transient receptor potential cation channel, subfamily A, member 1
40130240Full LengthBC131963transient receptor potential cation channel, subfamily A, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_808449  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_177781 NP_808449 Q8BLA8 Ank
Ion_trans

Related Sequences

 
mRNAGenPeptSwissProt
BC120563 AAI20564 Q8BLA8
BC131963 AAI31964 Q8BLA8
AY231177 AAO43183 Q8BLA8
AK045771 BAC32487 Q8BLA8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Trpa1 NP_808449 R.norvegicus Trpa1 312896   NP_997491 97
H.sapiens TRPA1 8989 Gene Info NP_015628 80
A.gambiae AgaP_AGAP004863 1275095   XP_314325 38
D.melanogaster TrpA1 39015   NP_648263 36
C.elegans trpa-1 178118   NP_502249 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)