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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Prdx6, Peroxiredoxin 6
Sequence ID:NM_007453
Entrez Gene ID:11758
Ensembl ID:ENSMUSG00000026701

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 H2.1|1 83.6

Chromosomal Position (from UCSC)

Chromosomal Position:1: 161241114 - 161251134

NM_007453 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11738163170242163171979
17391885163173705163173851
18862032163174326163174472
20332189163177387163177543
21902334163181152163181296

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4215591Full LengthBC013489peroxiredoxin 6
30309446Full LengthBC061181peroxiredoxin 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031479  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_007453 NP_031479 Q6GT24   AhpC-TSA

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF004670 AAC53277 Q53ZU7
O08709
EC 1.11.1.9
EC 1.11.1.15
AF093852 AAC63376 Q6GT24
O08709
EC 1.11.1.9
EC 1.11.1.15
BC013489 AAH13489 Q6GT24
O08709
EC 1.11.1.9
EC 1.11.1.15
BC061181 AAH61181 Q6GT24  
AK030413 BAC26952 Q6GT24
O08709
EC 1.11.1.9
EC 1.11.1.15
AK076191 BAC36244 Q8BPD3  
AK172888 BAD32166 Q6A0D0  
AK157820 BAE34210 Q6GT24  
AK161710 BAE36544 Q6GT24  
AK168223 BAE40177 Q53ZU7
O08709
EC 1.11.1.9
EC 1.11.1.15
Y12883 CAA73383 Q53ZU7
O08709
EC 1.11.1.9
EC 1.11.1.15

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Prdx6 NP_031479 R.norvegicus Prdx6 94167   NP_446028 93
H.sapiens PRDX6 9588 Gene Info NP_004896 90
D.melanogaster Prx6005 33493   NP_523463 60
A.gambiae TPX5 1270086   XP_308753 58
C.elegans prdx-6 176837   NP_741287 52
S.cerevisiae PRX1 852215   NP_009489 51
N.crassa NCU06031 3875759   XP_959621 51
P.falciparum 1-cyspxn 2655354   XP_001349492 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)