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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cpt1a, carnitine palmitoyltransferase 1a, liver
Sequence ID:NM_013495
Entrez Gene ID:12894
Ensembl ID:ENSMUSG00000024900

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19 A|19 2.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:19: 3349226 - 3385729

 Exon Info From UCSC:
NM_013495

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2649352Full LengthBC038395carnitine palmitoyltransferase 1a, liver
4160676Full LengthBC046383carnitine palmitoyltransferase 1a, liver
6832731Full LengthBC054791carnitine palmitoyltransferase 1a, liver

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038523  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_013495 NP_038523 P97742 EC 2.3.1.21 Carn_acyltransf

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
S82796 AAB39370 P97742 EC 2.3.1.21
AF017175 AAC31641 P97742 EC 2.3.1.21
BC038395 AAH38395 P97742 EC 2.3.1.21
BC046383 AAH46383 P97742 EC 2.3.1.21
BC054791 AAH54791 Q7TQD5
P97742
EC 2.3.1.21
AK050213 BAC34126 P97742 EC 2.3.1.21
AK077454 BAC36808 P97742 EC 2.3.1.21
AK133472 BAE21673 Q7TQD5
P97742
EC 2.3.1.21
AK136487 BAE23002 Q7TQD5
P97742
EC 2.3.1.21
AK147770 BAE28126 Q3UGT1  
AK149688 BAE29027 Q7TQD5
P97742
EC 2.3.1.21
D49472 BAF79672 A8ASF5  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cpt1a NP_038523 R.norvegicus Cpt1a 25757   NP_113747 97
H.sapiens CPT1A 1374 Gene Info NP_001867 87
A.gambiae AgaP_AGAP010164 1279583   XP_319335 54
D.melanogaster whd 36109   NP_001163112 53
C.elegans cpt-1 174912   NP_496721 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta