Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Opn5, opsin 5
Sequence ID:NM_181753
Entrez Gene ID:353344
Ensembl ID:ENSMUSG00000043972

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17|17 B3

Chromosomal Position (from UCSC)

Chromosomal Position:17: 42556781 - 42580738

NM_181753 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
17644269373142694494
7658224271318742713244
82310644271749542717736
106513994272963542729969
140015704273351142733681
157116904274406842744187
169118244274812842748261

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40130126Full LengthBC125611opsin 5
40130287Full LengthBC132010opsin 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_861418  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_181753 NP_861418 Q6VZZ7 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
BC125611 AAI25612 Q6VZZ7
BC132010 AAI32011 Q6VZZ7
AY255592 AAO85104 Q6VZZ7
AY288426 AAP72135 Q6VZZ7
AY318865 AAR08201 Q6VZZ7
AK039525 BAC30373 Q6VZZ7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Opn5 NP_861418 R.norvegicus Opn5 316259   NP_861437 99
H.sapiens OPN5 221391 Gene Info NP_859528 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)