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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Krt1, keratin 1
Sequence ID:NM_008473
Entrez Gene ID:16678
Ensembl ID:ENSMUSG00000046834

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 F3|15 58.81 cM

Chromosomal Position (from UCSC)

Chromosomal Position:15: 101845427 - 101850786

NM_008473 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16869101675856101676709
870904101676798101676832
9051125101677254101677474
11261251101677936101678061
12521416101678187101678351
14171512101678530101678625
15131573101679000101679060
15741788101679374101679588
17892462101680543101681216

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40093577Full LengthBC117842keratin 1
40093580Full LengthBC117843keratin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032499  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008473 NP_032499 P04104 Filament

Related Sequences

 
mRNAGenPeptSwissProt
M10937 AAD05191 P04104
BC117842 AAI17843 P04104
BC117843 AAI17844 P04104
AK019521 BAB31776 P04104

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Krt1 NP_032499 R.norvegicus Krt1 300250   NP_001008802 92
H.sapiens KRT1 3848 Gene Info NP_006112 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)