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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Top1mt, DNA topoisomerase 1, mitochondrial
Sequence ID:NM_028404
Entrez Gene ID:72960
Ensembl ID:ENSMUSG00000000934

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15|15 E1

Chromosomal Position (from UCSC)

Chromosomal Position:15: 75657032 - 75678790

 Exon Info From UCSC:
NM_028404

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861602Full LengthBC138582DNA topoisomerase 1, mitochondrial
8861603Full LengthBC138583DNA topoisomerase 1, mitochondrial
9053892Full LengthBC145336DNA topoisomerase 1, mitochondrial

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_082680  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_028404 NP_082680 Q8R4U6 EC 5.99.1.2 Topoisom_I
Topoisom_I_N

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC138582 AAI38583 Q8R4U6 EC 5.99.1.2
BC138583 AAI38584 Q8R4U6 EC 5.99.1.2
BC145336 AAI45337 B7ZNM9  
AF362952 AAM00270 Q8R4U6 EC 5.99.1.2
AK013665 BAB28946 Q9D6H0  
AK147119 BAE27691 Q8R4U6 EC 5.99.1.2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Top1mt NP_082680 R.norvegicus Top1mt 300029   NP_001002798 94
H.sapiens TOP1MT 116447 Gene Info NP_443195 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)