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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Parn, poly(A)-specific ribonuclease (deadenylation nuclease)
Sequence ID:NM_028761
Entrez Gene ID:74108
Ensembl ID:ENSMUSG00000022685

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16|16 B1

Chromosomal Position (from UCSC)

Chromosomal Position:16: 13537963 - 13668168

 Exon Info From UCSC:
NM_028761

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4015784Full LengthBC021899poly(A)-specific ribonuclease (deadenylation nuclease)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_083037  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_028761 NP_083037   R3H
CAF1

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC021899 AAH21899 Q8VDG3 EC 3.1.13.4
AK004572 BAB23382 Q8VDG3 EC 3.1.13.4
AK045181 BAC32249 Q8VDG3 EC 3.1.13.4
AK160611 BAE35913 Q3TUQ8  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Parn NP_083037 R.norvegicus Parn 360464   XP_340741 94
H.sapiens PARN 5073 Gene Info NP_002573 88
A.gambiae PARN 1269783   XP_308433 36
A.thaliana AHG2 842037   NP_175983 30
S.pombe SPBC29A10.09c 2540515   NP_596054 29
C.elegans K10C8.1 187256   NP_506169 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)