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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Msh6, mutS homolog 6 (E. coli)
Sequence ID:NM_010830
Entrez Gene ID:17688
Ensembl ID:ENSMUSG00000005370

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 E4|17 47.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 87986558 - 87990882

NM_010830 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13568837438988374744
3575568837953088379729
5577268838278488382953
72732628838378588386320
326335318838752588387793
353236498838848388388600
365037398838876688388855
374038948838953388389687
389540948838977088389969
409542548839006388390222

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4953238Full LengthBC051160mutS homolog 6 (E. coli)
6518577Full LengthBC051634mutS homolog 6 (E. coli)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034960  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010830 NP_034960 P54276 MutS_V
PWWP
MutS_I
MutS_II
MutS_IV
MutS_III

Related Sequences

 
mRNAGenPeptSwissProt
U41283 AAA83775 Q61061
U61388 AAB39930 P54276
U61389 AAB39931 P54276
U42190 AAC53034 P54276
BC051160 AAH51160 P54276
BC051634 AAH51634 P54276
AK010643 BAB27085 Q9CRH0
AK088259 BAC40242 Q8C2N9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Msh6 NP_034960 R.norvegicus LOC100360342 100360342   XP_002729643 92
H.sapiens MSH6 2956 Gene Info NP_000170 86
A.gambiae AgaP_AGAP003190 1273861   XP_312887 47
D.melanogaster Msh6 39654   NP_648755 45
A.thaliana MSH6 828147   NP_192116 41
C.elegans msh-6 171914   NP_491163 40
N.crassa NCU08135 3875816   XP_959678 38
S.cerevisiae MSH6 851671   NP_010382 36
S.pombe msh6 2539215   NP_588344 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)