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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sfr1, SWI5 dependent recombination repair 1
Sequence ID:NM_026377
Entrez Gene ID:67788
Ensembl ID:ENSMUSG00000025066

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19 D2|19

Chromosomal Position (from UCSC)

Chromosomal Position:19: 47731776 - 47735208

NM_026377 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1664780624547806310
674254780711947807477
4268184780800847808400
81915834780931347810077

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5003059Full LengthBC024403RIKEN cDNA 6330577E15 gene

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026377 NP_080653 Q8BP27  

Related Sequences

 
mRNAGenPeptSwissProt
BC024403 AAH24403 Q8BP27
AK004073 BAB23154 Q8BP27
AK011531 BAB27680 Q8BP27
AK014266 BAB29232 Q8BP27
AK016079 BAB30105 Q8BP27
AK077875 BAC37045 Q8BP27
AK078147 BAC37148 Q8BP27
AK146810 BAE27450 Q8BP27
AK167406 BAE39495 Q8BP27
AK168068 BAE40043 Q8BP27
AK168427 BAE40336 Q8BP27
AB597963 BAJ25749 E3WH30

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sfr1 NP_080653 R.norvegicus Sfr1 294030   NP_001041321 81
H.sapiens SFR1 119392 Gene Info NP_001002759 58

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)