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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Chmp3, charged multivesicular body protein 3
Sequence ID:NM_025783
Entrez Gene ID:66700
Ensembl ID:ENSMUSG00000053119

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6 C3|6 31.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 71543980 - 71580168

NM_025783 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11807149384771494026
1812417150239271502452
2424217151089071511069
4225437152410871524229
5446587152772471527838
65925927152963471531567

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3154282Full LengthBC049964vacuolar protein sorting 24 (yeast)
4163548IncompleteBC027441vacuolar protein sorting 24 (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080059  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025783 NP_080059 Q9CQ10 ESCRT-III

Related Sequences

 
mRNAGenPeptSwissProt
BC049964 AAH49964 Q9CQ10
AK009414 BAB26273 Q9CQ10
AK009447 BAB26293 Q9D792
AK014818 BAB29566 Q9CQ10
AK016677 BAB30375 Q9CQ10
AK018611 BAB31306 Q9CQ10
AK083562 BAC38951 Q9CQ10

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Chmp3 NP_080059 R.norvegicus Chmp3 282834   NP_758834 99
H.sapiens CHMP3 51652 Gene Info NP_057163 97
A.gambiae AgaP_AGAP003507 1270924   XP_309652 62
C.elegans T27F7.1 173863   NP_494919 59
D.melanogaster vps24 40542   NP_649451 59
A.thaliana VPS24.1 832359   NP_197686 42
A.thaliana VPS24.2 823635   NP_190086 39
N.crassa NCU01791 3872618   XP_956469 39
S.cerevisiae VPS24 853825   NP_012883 35
S.pombe vps24 2542234   NP_594587 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)