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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rpa1, replication protein A1
Sequence ID:NM_001164223
NM_026653
Entrez Gene ID:68275
Ensembl ID:ENSMUSG00000000751

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B5|11 44.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 75300349 - 75312395

 Exon Info From UCSC:
NM_001164223
NM_026653

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4487586Full LengthBC019119replication protein A1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080929  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001164223 NP_001157695    
NM_026653 NP_080929 Q8VEE4 tRNA_anti
Rep-A_N
Rep_fac-A_C

Related Sequences

 
mRNAGenPeptSwissProt
BC019119 AAH19119 Q8VEE4
AK148035 BAE28302 Q8VEE4
AK150785 BAE29849 Q8VEE4
AK151590 BAE30530 Q8VEE4
AK152296 BAE31105 Q3U8B3
AK153144 BAE31755 Q8VEE4
AK165316 BAE38134 Q8VEE4
AK165944 BAE38476 Q8VEE4
AK167598 BAE39655 Q8VEE4
AK169599 BAE41250 Q8VEE4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rpa1 NP_080929 R.norvegicus Rpa1 287524   NP_001041308 93
H.sapiens RPA1 6117 Gene Info NP_002936 86
D.melanogaster RpA-70 40972   NP_524274 45
A.gambiae AgaP_AGAP001421 1281755   XP_321709 44
N.crassa NCU03606 3877515   XP_961333 39
A.thaliana RPA70C 834576   NP_199353 38
S.pombe ssb1 2541158   NP_595092 38
A.thaliana AT4G19130 827651   NP_567576 37
S.cerevisiae RFA1 851266   NP_009404 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta