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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Eif5a, eukaryotic translation initiation factor 5A
Sequence ID:NM_001166589
NM_001166590
NM_001166591
NM_001166592
NM_001166593
NM_001166594
NM_001166595
NM_001166596
NM_181582
Entrez Gene ID:276770
Ensembl ID:ENSMUSG00000078812

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B3|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 69916724 - 69921286

 Exon Info From UCSC:
NM_001166589
NM_001166590
NM_001166591
NM_001166592
NM_001166593
NM_001166594
NM_001166595
NM_001166596
NM_181582

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3587894Full LengthBC008093eukaryotic translation initiation factor 5A
3591197Full LengthBC003889eukaryotic translation initiation factor 5A
4482804Full LengthBC024899eukaryotic translation initiation factor 5A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_853613  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001166589 NP_001160061    
NM_001166590 NP_001160062    
NM_001166591 NP_001160063    
NM_001166592 NP_001160064    
NM_001166593 NP_001160065    
NM_001166594 NP_001160066    
NM_001166595 NP_001160067    
NM_001166596 NP_001160068    
NM_181582 NP_853613 P63242 eIF-5a

Related Sequences

 
mRNAGenPeptSwissProt
BC003889 AAH03889 P63242
BC008093 AAH08093 P63242
BC024899 AAH24899 P63242
AY129323 AAN17519  
AY129323 AAN17520 Q7TME3
AY129323 AAN17521 P63242
AY129324 AAN17522 Q7TNN7
AY129324 AAN17523 Q7TNN6
AY129324 AAN17524 Q7TMA1
AY129324 AAN17525 Q7TMB4
AY129324 AAN17526  
AY129324 AAN17527 P63242
AY129325 AAN17528 P63242
AY129326 AAN17529 Q7TMA1
AY129326 AAN17530 Q7TMB4
AY129326 AAN17531  
AY129326 AAN17532 P63242
AY129327 AAN17533 Q7TME3
AY129327 AAN17534 P63242
AY129328 AAN17535 P63242
AY129329 AAN17536 Q7TMA1
AY129329 AAN17537 Q7TMB4
AY129329 AAN17538  
AY129329 AAN17539 P63242
AK011306 BAB27532 P63242
AK011470 BAB27641 P63242
AK149705 BAE29039 P63242

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Eif5a NP_853613 R.norvegicus Eif5a 287444   NP_001028853 100
S.pombe tif512 2540232   NP_596130 66
S.pombe tif51 2542694   NP_594457 66
S.cerevisiae ANB1 853506   NP_012581 65
S.cerevisiae HYP2 856677   NP_010880 64
N.crassa NCU05274 3878064   XP_961911 63

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)