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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Prrx2, paired related homeobox 2
Sequence ID:NM_009116
Entrez Gene ID:20204
Ensembl ID:ENSMUSG00000039476

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 B|2 19.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 30834971 - 30881217

NM_009116 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13153070088630701200
3164973073392930734110
4986763073501130735189
67711273073631430736764

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860891Full LengthBC137872paired related homeobox 2
8860893Full LengthBC137874paired related homeobox 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033142  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009116 NP_033142 Q06348 Homeobox
OAR

Related Sequences

 
mRNAGenPeptSwissProt
BC137872 AAI37873 A2APZ7
BC137874 AAI37875 A2APZ7
AK019971 BAB31942 Q9CY80
X14572 CAA32710 Q06348
X52875 CAA37055 Q06348

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Prrx2 NP_033142 R.norvegicus Prrx2 113931   NP_001099209 98
H.sapiens PRRX2 51450 Gene Info NP_057391 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)