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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Chd3, chromodomain helicase DNA binding protein 3
Sequence ID:NM_146019
Entrez Gene ID:216848
Ensembl ID:ENSMUSG00000018474

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B3|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 69364013 - 69369313

 Exon Info From UCSC:
NM_146019

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5100741IncompleteBC049913chromodomain helicase DNA binding protein 3
6406263IncompleteBC060721chromodomain helicase DNA binding protein 3

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_146019 NP_666131    

Related Sequences

 
mRNAGenPeptSwissProt
AF020311 AAB94878 O35327
BC030435 AAH30435 Q8K0T3
BC055484 AAH55484 Q7TML9
AK045449 BAC32375 Q8BR71

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Chd3 NP_666131 R.norvegicus Chd3 303241   XP_220602 99
H.sapiens CHD3 1107 Gene Info NP_001005271 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)