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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Clcn2, chloride channel 2
Sequence ID:NM_009900
Entrez Gene ID:12724
Ensembl ID:ENSMUSG00000022843

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 B1|16 16.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:16: 20702965 - 20716114

 Exon Info From UCSC:
NM_009900

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860644Full LengthBC137625chloride channel 2
40129622Full LengthBC120699chloride channel 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034030  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009900 NP_034030 Q9R0A1 CBS
Voltage_CLC

Related Sequences

 
mRNAGenPeptSwissProt
AF139724 AAD26466 Q9R0A1
AF097415 AAD50604 Q9R0A1
BC120699 AAI20700 Q9R0A1
BC137625 AAI37626 Q9R0A1
AK155104 BAE33049 Q3TBI1
AK171231 BAE42328 Q3TBI1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Clcn2 NP_034030 R.norvegicus Clcn2 29232   NP_058833 99
H.sapiens CLCN2 1181 Gene Info NP_004357 94
A.gambiae GPRMGL4 1273077   XP_312021 54
D.melanogaster ClC-a 41428   NP_001097752 52
C.elegans clh-3 174187   NP_001022060 45
C.elegans clh-4 180687   NP_001024886 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)