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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hspd1, heat shock protein 1 (chaperonin)
Sequence ID:NM_010477
Entrez Gene ID:15510
Ensembl ID:ENSMUSG00000025980

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 C1.2|1

Chromosomal Position (from UCSC)

Chromosomal Position:1: 55077834 - 55087845

 Exon Info From UCSC:
NM_010477

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3585270Full LengthBC016400heat shock protein 1 (chaperonin)
5032757IncompleteBC106112heat shock protein 1 (chaperonin)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034607  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010477 NP_034607   Cpn60_TCP1

Related Sequences

 
mRNAGenPeptSwissProt
BC016400 AAH16400 P63038
BC018545 AAH18545 P63038
BC106112 AAI06113 P63038
AK088844 BAC40607 P63038
AK143882 BAE25581 P63038
AK146831 BAE27466 P63038
X53584 CAA37653 P63038
X55023 CAA38762 P63038

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hspd1 NP_034607 R.norvegicus Hspd1 63868   NP_071565 100
H.sapiens HSPD1 3329 Gene Info NP_002147 98
D.melanogaster Hsp60 32045   NP_511115 76
A.gambiae AgaP_AGAP004002 1278824   XP_318461 75
C.elegans hsp-60 175316   NP_497429 73
A.thaliana HSP60-2 817883   NP_850203 61
N.crassa NCU01589 3872647   XP_956500 58
S.cerevisiae HSP60 850963   NP_013360 57
S.pombe mcp60 2543131   NP_592894 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)