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Gene Info

Gene Information For:Mm. Atp6v0d1, ATPase, H+ transporting, lysosomal V0 subunit D1
Sequence ID:NM_013477
Entrez Gene ID:11972
Ensembl ID:ENSMUSG00000013160

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8 D3|8

Chromosomal Position (from UCSC)

Chromosomal Position:8: 105524467 - 105565925

NM_013477 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1595108048369108048963
596673108049056108049133
674850108049222108049398
851928108049523108049600
9291008108053073108053152
10091187108054714108054892
11881359108063220108063391
13601617108089682108089939

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3662404Full LengthBC011075ATPase, H+ transporting, lysosomal V0 subunit D1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038505  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013477 NP_038505 P51863 vATP-synt_AC39

Related Sequences

 
mRNAGenPeptSwissProt
U21549 AAA92288 P51863
U13840 AAC83085 P51863
BC011075 AAH11075 Q921S5
AK083372 BAC38889 P51863
AB088408 BAC57954 P51863
AK171515 BAE42500 P51863

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atp6v0d1 NP_038505 H.sapiens ATP6V0D1 9114 Gene Info NP_004682 100
R.norvegicus Atp6v0d1 291969   NP_001011927 100
D.melanogaster VhaAC39 31342   NP_570080 82
A.gambiae AgaP_AGAP000721 1272314   XP_311260 80
C.elegans vha-16 172134   NP_491515 75
S.pombe vma6 2542384   NP_594237 56
N.crassa NCU03395 3872989   XP_956842 54
A.thaliana AT3G28710 822502   NP_189512 52
A.thaliana AT3G28715 822503   NP_189513 51
S.cerevisiae VMA6 851168   NP_013552 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)