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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lrrc59, leucine rich repeat containing 59
Sequence ID:NM_133807
Entrez Gene ID:98238
Ensembl ID:ENSMUSG00000020869

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 D|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 94629797 - 94645211

NM_133807 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12869449113794491422
2873469449339494493453
3475059449585894496016
5066109449622594496329
6116839449984494499916
6848579450253394502706
85827809450460794506529

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2647513Full LengthBC006877leucine rich repeat containing 59
30429192Full LengthBC066172leucine rich repeat containing 59

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_598568  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_133807 NP_598568 Q922Q8 LRR_1

Related Sequences

 
mRNAGenPeptSwissProt
BC006877 AAH06877 Q922Q8
BC066172 AAH66172 Q922Q8
AK053450 BAC35390 Q922Q8
AK150916 BAE29954 Q3UBL0
AK159374 BAE35030 Q922Q8
AK159552 BAE35177 Q922Q8
AK166576 BAE38865 Q922Q8
AK167604 BAE39660 Q922Q8
AK169250 BAE41014 Q3TF84
AK169390 BAE41137 Q922Q8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lrrc59 NP_598568 R.norvegicus Lrrc59 287633   NP_001008281 98
H.sapiens LRRC59 55379 Gene Info NP_060979 95
D.melanogaster CG3408 39107   NP_648328 46
A.gambiae AgaP_AGAP007632 1269595   XP_308238 42
C.elegans F56A8.3 176740   NP_499730 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)