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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ltb, lymphotoxin B
Sequence ID:NM_008518
Entrez Gene ID:16994
Ensembl ID:ENSMUSG00000024399

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 19.06 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 35194522 - 35196305

NM_008518 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11773533145135331627
1784933533199435332309
49410953533264835333249

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100064111Full LengthBC160367lymphotoxin B
3372747IncompleteBC064062lymphotoxin B
40044812IncompleteBC114919lymphotoxin B

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032544  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008518 NP_032544 P41155 TNF

Related Sequences

 
mRNAGenPeptSwissProt
U16985 AAA70089 P41155
BC114919 AAI14920 A4FUI4
BC160367 AAI60367  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ltb NP_032544 R.norvegicus Ltb 361795   NP_997672 93
H.sapiens LTB 4050 Gene Info NP_002332 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)