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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Stx17, syntaxin 17
Sequence ID:NM_026343
Entrez Gene ID:67727
Ensembl ID:ENSMUSG00000061455

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 B1|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 48124925 - 48182238

NM_026343 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1404813779048137829
412254814463648144820
2262914815329148153356
2925144817168248171904
5156304817979948179914
6316814818007748180127
6827684819354148193627
76957764819437048199377

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1243532Full LengthBC028639syntaxin 17

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080619  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026343 NP_080619 Q9D0I4 SNARE

Related Sequences

 
mRNAGenPeptSwissProt
BC028639 AAH28639 Q9D0I4
AK011400 BAB27592 Q9D0I4
AK014718 BAB29518 Q9D614
AK018526 BAB31255 Q9D0I4
AK034718 BAC28806 Q9D0I4
AK154503 BAE32634 Q9D0I4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Stx17 NP_080619 R.norvegicus Stx17 252853   NP_663775 96
H.sapiens STX17 55014 Gene Info NP_060389 93
A.gambiae AgaP_AGAP005684 1276361   XP_315698 33
D.melanogaster Syx17 38541   NP_523926 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)