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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Pou5f1, POU domain, class 5, transcription factor 1
Sequence ID:NM_001252452
NM_013633
Entrez Gene ID:18999
Ensembl ID:ENSMUSG00000024406

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 19.23 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 35506099 - 35510625

Transcript StartTranscript EndChromosomal Start Chromosomal End
14453564298335643427
4465663564604735646167
5676973564635235646482
6988563564692535647083
85713463564723235647721

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30019896Full LengthBC068268POU domain, class 5, transcription factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038661  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001252452 NP_001239381    
NM_013633 NP_038661 P20263 Homeobox
Pou

Related Sequences

 
mRNAGenPeptSwissProt
M34381 AAA39844 P20263
BC068268 AAH68268 P20263
AB375269 BAG84134 E2JL30
AB375272 BAG84135 E2JL30
AB375273 BAG84136 E2JL30
AB375274 BAG84137 E2JL33
AB375277 BAG84138 E2JL30
AB375278 BAG84139 E2JL35
AB375271 BAL14699 G3UZG9
X52437 CAA36682 P20263

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pou5f1 NP_038661 R.norvegicus Pou5f1 294562   NP_001009178 95
H.sapiens POU5F1 5460 Gene Info NP_002692 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)