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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Vps54, vacuolar protein sorting 54 (yeast)
Sequence ID:NM_139061
Entrez Gene ID:245944
Ensembl ID:ENSMUSG00000020128

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 A3|11 12.1 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 21311077 - 21321124

 Exon Info From UCSC:
NM_139061

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5042879Full LengthBC025012vacuolar protein sorting 54 (yeast)
5355245IncompleteBC024789vacuolar protein sorting 54 (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_620692  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_139061 NP_620692 Q91ZJ4
Q5SPW0
Vps54

Related Sequences

 
mRNAGenPeptSwissProt
BC023474 AAH23474 Q5SPW0
BC024789 AAH24789 Q5SPW0
BC025012 AAH25012 Q5SPW0
AF424699 AAL24808 Q91ZJ4
AK044995 BAC32176 Q8BRE9
AK077306 BAC36741 Q5SPW0
AB052761 BAC53794 Q5SPW0
AK137211 BAE23271 Q3UVJ8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vps54 NP_620692 R.norvegicus Vps54 286932   NP_775170 95
H.sapiens VPS54 51542 Gene Info NP_057600 93
A.gambiae AgaP_AGAP008353 1277628   XP_317102 43
D.melanogaster scat 47942   NP_524905 40
A.thaliana VPS54 827690   NP_193684 31
C.elegans vps-54 179473   NP_505711 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)