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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Usp47, ubiquitin specific peptidase 47
Sequence ID:NM_133758
NM_177249
Entrez Gene ID:74996
Ensembl ID:ENSMUSG00000059263

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7|7 F2

Chromosomal Position (from UCSC)

Chromosomal Position:7: 112110302 - 112111384


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30062566Full LengthBC108425ubiquitin specific peptidase 47
4211195IncompleteBC012722ubiquitin specific peptidase 47
5068518IncompleteBC024117ubiquitin specific peptidase 47
6834481IncompleteBC089364ubiquitin specific peptidase 47

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_598519  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_133758 NP_598519     UCH
NM_177249 NP_796223 Q8BY87 EC 3.4.19.12  

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC012722 AAH12722 Q8BY87 EC 3.4.19.12
BC024117 AAH24117 Q8BY87 EC 3.4.19.12
BC057362 AAH57362 Q6PFY4  
BC089364 AAH89364 Q8BY87 EC 3.4.19.12
BC108425 AAI08426 Q8BY87 EC 3.4.19.12
AK030909 BAC27179 Q8BY87 EC 3.4.19.12
AK030963 BAC27195 Q8BY87 EC 3.4.19.12
AK041541 BAC30979 Q8BY87 EC 3.4.19.12
AK082114 BAC38411 Q8BY87 EC 3.4.19.12
AK087981 BAC40073 Q8BY87 EC 3.4.19.12
AK131138 BAD21388 Q8BY87 EC 3.4.19.12
AK151051 BAE30068 Q3UB96  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Usp47 NP_598519 R.norvegicus Usp47 308896   NP_001101012 98
H.sapiens USP47 55031 Gene Info NP_060414 95
D.melanogaster Ubp64E 38644   NP_996001 46
A.gambiae AgaP_AGAP007106 4576308   XP_001237119 42
C.elegans T05H10.1 174290   NP_495686 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)