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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ckap5, Cytoskeleton associated protein 5
Sequence ID:NM_001165989
NM_029437
Entrez Gene ID:75786
Ensembl ID:ENSMUSG00000040549

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 E1|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 91526835 - 91565168

 Exon Info From UCSC:
NM_001165989
NM_029437

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861354Full LengthBC138334cytoskeleton associated protein 5
30655413Full LengthBC096422cytoskeleton associated protein 5
30674362Full LengthBC089032cytoskeleton associated protein 5
4484883IncompleteBC034094cytoskeleton associated protein 5
4501645IncompleteBC017140cytoskeleton associated protein 5
6813678IncompleteBC059881cytoskeleton associated protein 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_083713  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001165989 NP_001159461    
NM_029437 NP_083713   HEAT

Related Sequences

 
mRNAGenPeptSwissProt
BC017140 AAH17140 A2AGT5
BC034094 AAH34094 Q8K250
BC059881 AAH59881 Q6PB55
BC089032 AAH89032 A2AGT5
BC096422 AAH96422 A2AGT5
BC098098 AAH98098 Q4V782
BC138334 AAI38335 A2AGT5
AK015282 BAB29779 A2AGT5
AK122204 BAC65486 Q80U79
AK149854 BAE29125 A2AGT5
AK165862 BAE38422 A2AGT5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ckap5 NP_001159461 R.norvegicus Ckap5 311191   XP_230282 97
H.sapiens CKAP5 9793 Gene Info NP_001008938 95
A.gambiae AgaP_AGAP011162 1270767   XP_309487 45
D.melanogaster msps 41952   NP_732105 44
A.thaliana MOR1 818131   NP_565811 32
C.elegans zyg-9 174350   NP_495784 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)