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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Clcnka, chloride channel Ka
Sequence ID:NM_001146307
NM_024412
Entrez Gene ID:12733
Ensembl ID:ENSMUSG00000033770

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 E1|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 141384885 - 141398196

 Exon Info From UCSC:
NM_001146307
NM_024412

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5042736Full LengthBC037077chloride channel Ka

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_077723  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001146307 NP_001139779    
NM_024412 NP_077723 Q9WUB7 CBS
Voltage_CLC

Related Sequences

 
mRNAGenPeptSwissProt
AF124848 AAD21083 Q9WUB7
BC037077 AAH37077 Q9WUB7
AY373832 AAQ81628 Q9WUB7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Clcnka NP_077723 R.norvegicus Clcnka 79425   NP_445779 95
H.sapiens CLCNKB 1188 Gene Info NP_000076 81

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)