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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Lamp1, lysosomal-associated membrane protein 1
Sequence ID:NM_010684
Entrez Gene ID:16783
Ensembl ID:ENSMUSG00000031447

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8 A1.1|8 1.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:8: 13159271 - 13175336

NM_010684 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13001315913413159433
3014191316584813165966
4206391316715713167376
6407981316780613167964
7999771317120413171382
97810971317254013172659
109811641317362613173692
116513351317377913173949
133622551317441813175337

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5716524Full LengthBC049097lysosomal-associated membrane protein 1
3589395IncompleteBC006785lysosomal-associated membrane protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034814  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010684 NP_034814 P11438 Lamp

Related Sequences

 
mRNAGenPeptSwissProt
J03881 AAA39411 P11438
M32015 AAA39428 P11438
Q3TA96
M25244 AAA39869 P11438
BC006785 AAH06785 Q922T9
BC049097 AAH49097 P11438
Q3TA96
AY069968 AAL58070 Q8VH34
AK004637 BAB23428 Q9DC13
AK159096 BAE34812 P11438
Q3TA96
AK159376 BAE35032 Q3TX84
AK172007 BAE42773 P11438
Q3TA96

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lamp1 NP_034814 R.norvegicus Lamp1 25328   NP_036989 84
H.sapiens LAMP1 3916 Gene Info NP_005552 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)