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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. P4hb, prolyl 4-hydroxylase, beta polypeptide
Sequence ID:NM_011032
Entrez Gene ID:18453
Ensembl ID:ENSMUSG00000025130

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 D-E|11 80.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 120560304 - 120572873

 Exon Info From UCSC:
NM_011032

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3591404Full LengthBC008549prolyl 4-hydroxylase, beta polypeptide
5124376Full LengthBC093512prolyl 4-hydroxylase, beta polypeptide

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035162  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_011032 NP_035162 P09103 EC 5.3.4.1 Thioredoxin

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
J05185 AAA39906 P09103 EC 5.3.4.1
BC008549 AAH08549 P09103 EC 5.3.4.1
BC093512 AAH93512 P09103 EC 5.3.4.1
AK141304 BAE24642 Q3URP6  
AK146542 BAE27247 Q3UJA8  
AK149605 BAE28987 Q3UDR2  
AK149965 BAE29199 Q3UDR2  
AK150002 BAE29230 P09103 EC 5.3.4.1
AK150422 BAE29545 P09103 EC 5.3.4.1
AK150755 BAE29825 Q3UBY9  
AK150805 BAE29868 P09103 EC 5.3.4.1
AK151351 BAE30327 Q3UA23  
AK151546 BAE30492 Q3UA23  
AK152141 BAE30979 P09103 EC 5.3.4.1
AK152217 BAE31045 P09103 EC 5.3.4.1
AK152834 BAE31534 Q3U738  
AK159606 BAE35225 P09103 EC 5.3.4.1
AK159729 BAE35323 Q3TWE3  
AK159965 BAE35520 P09103 EC 5.3.4.1
AK161537 BAE36449 Q3TT76  
AK167757 BAE39791 Q3TIQ5  
AK167796 BAE39826 Q3TIM0  
AK168330 BAE40268 P09103 EC 5.3.4.1
AK168336 BAE40274 Q3THC3  
AK168612 BAE40478 Q3TGS0  
AK168893 BAE40710 P09103 EC 5.3.4.1
AK169265 BAE41026 Q3TF72  
AK170603 BAE41907 P09103 EC 5.3.4.1
X06453 CAA29759 P09103 EC 5.3.4.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus P4hb NP_035162 R.norvegicus P4hb 25506   NP_037130 97
H.sapiens P4HB 5034 Gene Info NP_000909 94
C.elegans pdi-2 180724   NP_508778 57
A.gambiae AgaP_AGAP012407 1280308   XP_551775 56
D.melanogaster Pdi 39651   NP_524079 54
A.thaliana PDIL1-4 836185   NP_851234 42
A.thaliana PDIL1-3 824661   NP_191056 39
S.pombe SPAC1F5.02 2541460   NP_592871 36
N.crassa NCU09223 3875289   XP_959167 35
S.cerevisiae PDI1 850314   NP_009887 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta