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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Lsm2, LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Sequence ID:NM_001110101
NM_001204273
NM_001204274
NM_030597
Entrez Gene ID:27756
Ensembl ID:ENSMUSG00000007050

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 18.95 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 34982158 - 34985893

 Exon Info From UCSC:
NM_001110101
NM_030597

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3982410Full LengthBC014288LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
6774564Full LengthBC049543LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_085100  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001110101 NP_001103571    
NM_001204273 NP_001191202    
NM_001204274 NP_001191203    
NM_030597 NP_085100 O35901 LSM

Related Sequences

 
mRNAGenPeptSwissProt
AF204146 AAG31423 O35901
AF204147 AAG31424 O35901
AF204148 AAG31425 O35901
AF204149 AAG31426 O35901
AF204150 AAG31427 O35901
AF204151 AAG31428 O35901
AF204152 AAG31429 O35901
AF204153 AAG31430 Q9ES86
AF204154 AAG31431 Q9EP83
AF204155 AAG31432 Q9EP83
AF204156 AAG31433 Q9ES85
AF204157 AAG31434 Q9ES84
BC014288 AAH14288 Q3U9X2
O35900
BC049543 AAH49543 O35901
AK151605 BAE30544 Q3U9X2
O35900

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lsm2 NP_001103571 H.sapiens LSM2 57819 Gene Info NP_067000 100
A.gambiae AgaP_AGAP005136 1274814   XP_314020 98
D.melanogaster CG10418 39408   NP_648570 96
C.elegans gut-2 179833   NP_506348 84
A.thaliana AT1G03330 839526   NP_563682 76
P.falciparum PFE1020w 813019   XP_001351761 67
S.cerevisiae LSM2 852255   NP_009527 63
N.crassa NCU07382 3875013   XP_958875 63
S.pombe lsm2 2538804   NP_588459 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)