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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Setd3, SET domain containing 3
Sequence ID:NM_028262
Entrez Gene ID:52690
Ensembl ID:ENSMUSG00000056770

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12 F1|12 53.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:12: 108106439 - 108179263

 Exon Info From UCSC:
NM_028262

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4195130Full LengthBC019973SET domain containing 3
4503842Full LengthBC016123SET domain containing 3
4979330Full LengthBC057968SET domain containing 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_082538  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_028262 NP_082538 Q91WC0 EC 2.1.1.43 SET

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC016123 AAH16123 Q91WC0 EC 2.1.1.43
BC019973 AAH19973 Q91WC0 EC 2.1.1.43
BC057968 AAH57968 Q91WC0 EC 2.1.1.43
AY513271 AAS82953 Q91WC0 EC 2.1.1.43
AK011993 BAB27964 Q91WC0 EC 2.1.1.43
AK029403 BAC26435 Q91WC0 EC 2.1.1.43
AK031017 BAC27215 Q91WC0 EC 2.1.1.43
AK031371 BAC27371 Q91WC0 EC 2.1.1.43
AK146777 BAE27425 Q91WC0 EC 2.1.1.43
AK166570 BAE38861 Q91WC0 EC 2.1.1.43

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Setd3 NP_082538 H.sapiens SETD3 84193 Gene Info NP_115609 93
D.melanogaster CG32732 31638   NP_727144 36
C.elegans set-27 190607   NP_497604 32
A.thaliana AT1G14030 837964   NP_172856 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)