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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Uso1, USO1 homolog, vesicle docking protein (yeast)
Sequence ID:NM_019490
Entrez Gene ID:56041
Ensembl ID:ENSMUSG00000029407

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5|5 E3

Chromosomal Position (from UCSC)

Chromosomal Position:5: 92152440 - 92202798

 Exon Info From UCSC:
NM_019490

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4480992Full LengthBC016069USO1 homolog, vesicle docking protein (yeast)
3585327IncompleteBC005548USO1 homolog, vesicle docking protein (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062363  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019490 NP_062363 Q9Z1Z0 Uso1_p115_head
Uso1_p115_C

Related Sequences

 
mRNAGenPeptSwissProt
AF096868 AAC72967 Q9Z1Z0
BC005548 AAH05548 Q9Z1Z0
BC016069 AAH16069 Q9Z1Z0
AK144638 BAE25982 Q9Z1Z0
AK156070 BAE33571 Q9Z1Z0
AK168433 BAE40340 Q9Z1Z0
AK172425 BAE43001 Q9Z1Z0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Uso1 NP_062363 R.norvegicus Uso1 56042   NP_062252 97
H.sapiens USO1 8615 Gene Info NP_003706 93
A.gambiae AgaP_AGAP009840 1279258   XP_318953 54
D.melanogaster p115 31698   NP_572417 50
C.elegans K09B11.9 178311   NP_001040974 37
A.thaliana GC6 822375   NP_566820 31
N.crassa NCU01644 3872421   XP_956266 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)