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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pfdn5, Prefoldin 5
Sequence ID:NM_027044
Entrez Gene ID:56612
Ensembl ID:ENSMUSG00000001289

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15 F3|15 61.7

Chromosomal Position (from UCSC)

Chromosomal Position:15: 102326155 - 102331489

NM_027044 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1145102156546102156690
146248102156863102156965
249280102157248102157279
281355102158952102159026
356461102159142102159247
462678102161703102161919

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3666296Full LengthBC026920prefoldin 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_081320  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_027044 NP_081320 Q9WU28 Prefoldin

Related Sequences

 
mRNAGenPeptSwissProt
AF108357 AAD28373 Q9WU28
BC026920 AAH26920 Q9WU28
AK005682 BAB24185 Q6ZWY7
AK005806 BAB24247 Q9DAJ0
AK028206 BAC25814 Q9WU28
AK145883 BAE26723 Q9WU28

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pfdn5 NP_081320 H.sapiens PFDN5 5204 Gene Info NP_002615 99
R.norvegicus Pfdn5 300257   NP_001100264 98
S.pombe bob1 2540664   NP_596679 44
A.gambiae AgaP_AGAP003416 1272789   XP_311700 43
N.crassa NCU02963 3881513   XP_965350 40
S.cerevisiae GIM5 854879   NP_013616 38
A.thaliana PFD5 832393   NP_197720 37
D.melanogaster CG7048 42647   NP_001163688 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)