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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sin3a, Transcriptional regulator, SIN3A (yeast)
Sequence ID:NM_011378
NM_001110350
NM_001110351
Entrez Gene ID:20466
Ensembl ID:ENSMUSG00000042557

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 B|9 30.0

Chromosomal Position (from UCSC)

Chromosomal Position:9: 57081094 - 57125215

 Exon Info From UCSC:
NM_011378
NM_001110350
NM_001110351

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6837144Full LengthBC052716transcriptional regulator, SIN3A (yeast)
6856645IncompleteBC078454transcriptional regulator, SIN3A (yeast)
30050442IncompleteBC053385transcriptional regulator, SIN3A (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035508  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001110350 NP_001103820    
NM_001110351 NP_001103821    
NM_011378 NP_035508 Q60520 PAH
HDAC_interact

Related Sequences

 
mRNAGenPeptSwissProt
L38621 AAA69772 Q60520
L38620 AAA69773 Q60520
U22394 AAA89119 Q60520
L36831 AAB01610 Q60520
BC052716 AAH52716 Q60520
BC053385 AAH53385 Q60520
AK220292 BAD90217 Q60520
AK136972 BAE23192 Q3UVS7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sin3a NP_001103820 R.norvegicus Sin3a 363067   NP_001102231 99
H.sapiens SIN3A 25942 Gene Info NP_056292 98
A.gambiae AgaP_AGAP007892 1278063   XP_317596 53
D.melanogaster Sin3A 36382   NP_001188912 47
A.thaliana SNL1 821265   NP_001189789 37
A.thaliana SNL2 831354   NP_197006 37
N.crassa NCU02578 3881859   XP_965709 36
S.pombe pst1 2540018   NP_596012 34
S.cerevisiae SIN3 854158   NP_014639 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta