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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hgd, homogentisate 1, 2-dioxygenase
Sequence ID:NM_013547
NR_027778
Entrez Gene ID:15233
Ensembl ID:ENSMUSG00000022821

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 B3|16 27.3 cM

Chromosomal Position (from UCSC)

Chromosomal Position:16: 37580253 - 37612060

 Exon Info From UCSC:
NM_013547

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4973560Full LengthBC037628homogentisate 1, 2-dioxygenase
4974534Full LengthBC024369homogentisate 1, 2-dioxygenase
5054479Full LengthBC055029homogentisate 1, 2-dioxygenase
5099956Full LengthBC044758homogentisate 1, 2-dioxygenase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038575  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_013547 NP_038575 O09173 EC 1.13.11.5 HgmA

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC024369 AAH24369 Q05BJ1  
BC037628 AAH37628 Q8CI38  
BC044758 AAH44758 Q05BJ1  
BC055029 AAH55029 O09173 EC 1.13.11.5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hgd NP_038575 R.norvegicus Hgd 360719   NP_001012145 96
H.sapiens HGD 3081 Gene Info NP_000178 93
D.melanogaster hgo 34552   NP_523544 68
A.gambiae AgaP_AGAP009609 1278983   XP_318638 67
C.elegans hgo-1 172726   NP_492433 66
A.thaliana HGO 835494   NP_200219 58
N.crassa NCU05499 3876615   XP_960461 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)