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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sort1, Sortilin 1
Sequence ID:NM_019972
Entrez Gene ID:20661
Ensembl ID:ENSMUSG00000068747

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F3|3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 108284139 - 108356689

 Exon Info From UCSC:
NM_019972

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5704346Full LengthBC056343sortilin 1
4920258IncompleteBC034129sortilin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_064356  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001271599 NP_001258528    
NM_019972 NP_064356 Q6PHU5 BNR

Related Sequences

 
mRNAGenPeptSwissProt
AF175279 AAF22639 Q6PHU5
BC034129 AAH34129 Q6PHU5
BC056343 AAH56343 Q6PHU5
AK147442 BAE27915 Q6PHU5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sort1 NP_064356 R.norvegicus Sort1 83576   NP_113955 98
H.sapiens SORT1 6272 Gene Info NP_002950 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)