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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Trim28, tripartite motif-containing 28
Sequence ID:NM_011588
Entrez Gene ID:21849
Ensembl ID:ENSMUSG00000005566

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7|7 A2

Chromosomal Position (from UCSC)

Chromosomal Position:7: 13024550 - 13031035

 Exon Info From UCSC:
NM_011588

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6811294Full LengthBC089337tripartite motif-containing 28
6817165Full LengthBC058391tripartite motif-containing 28

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011588 NP_035718 Q62318  

Related Sequences

 
mRNAGenPeptSwissProt
U67303 AAB17272 Q62318
AF230391 AAG50170 Q62318
Q5EBP9
AF230392 AAG50171 Q62318
BC058391 AAH58391 Q62318
BC089337 AAH89337 Q62318
Q5EBP9
AK089084 BAC40742 Q62318
AK141357 BAE24661 Q62318
Q5EBP9
AK149995 BAE29223 Q3UDN8
X99644 CAA67963 Q62318
Q5EBP9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Trim28 NP_035718 R.norvegicus Trim28 116698   NP_446368 99
H.sapiens TRIM28 10155 Gene Info NP_005753 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)