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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Mmp1a, matrix metallopeptidase 1a (interstitial collagenase)
Sequence ID:NM_032006
Entrez Gene ID:83995
Ensembl ID:ENSMUSG00000043089

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9|9 A1-A2

Chromosomal Position (from UCSC)

Chromosomal Position:9: 7464186 - 7476416

 Exon Info From UCSC:
NM_032006

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40090601Full LengthBC117756matrix metallopeptidase 1a (interstitial collagenase)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_114395  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_032006 NP_114395 Q9EPL5 EC 3.4.24.7 Hemopexin
Peptidase_M10
PG_binding_1

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC117756 AAI17757 Q9EPL5 EC 3.4.24.7
AK049552 BAC33807 Q9EPL5 EC 3.4.24.7
AJ278462 CAC18880 Q9EPL5 EC 3.4.24.7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Mmp1a NP_114395 R.norvegicus Mmp1a 300339   NP_001128002 88
H.sapiens MMP1 4312 Gene Info NP_002412 60

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)