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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Grn, granulin
Sequence ID:NM_008175
Entrez Gene ID:14824
Ensembl ID:ENSMUSG00000034708

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 D|11 60.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 102430506 - 102436805

 Exon Info From UCSC:
NM_008175

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40109630Full LengthBC129849granulin
40109631Full LengthBC129850granulin
4911018IncompleteBC037047granulin
5397188IncompleteBC049943granulin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032201  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008175 NP_032201 Q544Y8
P28798
Granulin

Related Sequences

 
mRNAGenPeptSwissProt
M86736 AAA37191 P28798
BC129849 AAI29850 Q544Y8
P28798
BC129850 AAI29851 Q544Y8
AK013678 BAB28951 Q544Y8
P28798
AK018744 BAB31384 Q9D2V3
AK150125 BAE29325 Q3UDD6
AK150205 BAE29376 Q3UD85
AK150338 BAE29480 Q544Y8
P28798
AK150420 BAE29544 Q544Y8
P28798
AK150717 BAE29795 Q3UC19
AK151007 BAE30030 Q3U9N4
AK151343 BAE30321 Q3UAJ3
AK151713 BAE30632 Q3U9N4
AK151756 BAE30664 Q3U9K2
AK152048 BAE30904 Q3U8W3
AK152087 BAE30937 Q3U9N4
AK152118 BAE30962 Q544Y8
P28798
AK152213 BAE31041 Q544Y8
P28798
AK152705 BAE31433 Q3U9N4
AK152765 BAE31478 Q3U9N4
AK152944 BAE31615 Q544Y8
P28798
AK153289 BAE31872 Q3U9N4
AK153418 BAE31978 Q3U9N4
AK153470 BAE32021 Q3U5Q6
AK154492 BAE32624 Q3U9N4
AK159397 BAE35050 Q3TX66
AK159428 BAE35075 Q544Y8
P28798
AK159557 BAE35182 Q3TWT4
AK159809 BAE35389 Q3TW77
AK160022 BAE35565 Q3TVQ3
AK160033 BAE35576 Q3U9N4
AK160074 BAE35608 Q544Y8
P28798
X62321 CAA44197 P28798

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Grn NP_032201 R.norvegicus Grn 29143   NP_058809 87
H.sapiens GRN 2896 Gene Info NP_002078 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta