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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cdhr1, cadherin-related family member 1
Sequence ID:NM_130878
Entrez Gene ID:170677
Ensembl ID:ENSMUSG00000021803

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14 B|14

Chromosomal Position (from UCSC)

Chromosomal Position:14: 37077855 - 37098727

 Exon Info From UCSC:
NM_130878

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5369576Full LengthBC042454protocadherin 21
6490597Full LengthBC058270protocadherin 21

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_570948  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_130878 NP_570948 Q8VHP6 Cadherin

Related Sequences

 
mRNAGenPeptSwissProt
BC042454 AAH42454 Q8VHP6
BC049999 AAH49999 Q810K1
BC058270 AAH58270 Q8VHP6
AF426393 AAL65140 Q8VHP6
AB093300 BAC41482 Q8VHP6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cdhr1 NP_570948 R.norvegicus Cdhr1 93662   NP_446024 96
H.sapiens CDHR1 92211 Gene Info NP_149091 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)