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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc15a1, solute carrier family 15 (oligopeptide transporter), member 1
Sequence ID:NM_053079
Entrez Gene ID:56643
Ensembl ID:ENSMUSG00000025557

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14 E5|14

Chromosomal Position (from UCSC)

Chromosomal Position:14: 121459618 - 121505253

 Exon Info From UCSC:
NM_053079

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40093541Full LengthBC116248solute carrier family 15 (oligopeptide transporter), member 1
40093542Full LengthBC116249solute carrier family 15 (oligopeptide transporter), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_444309  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_053079 NP_444309 Q9JIP7 PTR2

Related Sequences

 
mRNAGenPeptSwissProt
AF205540 AAF81666 Q9JIP7
BC116248 AAI16249 Q14BA3
BC116249 AAI16250 Q14BA3
AK136428 BAE22973 Q3UWE2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc15a1 NP_444309 R.norvegicus Slc15a1 117261   NP_476462 93
H.sapiens SLC15A1 6564 Gene Info NP_005064 85
D.melanogaster CG2930 31341   NP_788856 44
A.gambiae AgaP_AGAP010383 1272661   XP_311562 43
C.elegans opt-2 180919   NP_509087 42
C.elegans opt-1 177973   NP_502002 42
A.thaliana PTR2 814735   NP_178313 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)