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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col4a6, Collagen, type IV, alpha 6
Sequence ID:NM_053185
Entrez Gene ID:94216
Ensembl ID:ENSMUSG00000031273

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:X F1-F2|X

Chromosomal Position (from UCSC)

Chromosomal Position:X: 141166027 - 141474076

 Exon Info From UCSC:
NM_053185

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3500535Full LengthBC057648collagen, type IV, alpha 6
3589442IncompleteBC004800collagen, type IV, alpha 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_444415  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_053185 NP_444415 Q9ESQ1 Collagen
C4

Related Sequences

 
mRNAGenPeptSwissProt
BC004800 AAH04800 Q99K97
BC057648 AAH57648 Q6PFB1
AB041351 BAB13674 Q9ESQ1
AK165178 BAE38061 Q3TNM7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col4a6 NP_444415 H.sapiens COL4A6 1288 Gene Info NP_378667 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta