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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col9a1, collagen, type IX, alpha 1
Sequence ID:NM_007740
Entrez Gene ID:12839
Ensembl ID:ENSMUSG00000026147

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 A5|1 15.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 24237480 - 24252579

 Exon Info From UCSC:
NM_007740

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3592397Full LengthBC038017collagen, type IX, alpha 1
6314986Full LengthBC046970collagen, type IX, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031766  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007740 NP_031766 Q8BSQ4 Collagen

Related Sequences

 
mRNAGenPeptSwissProt
L12215 AAA21834 Q05722
BC038017 AAH38017 Q9D0D2
BC046970 AAH46970 Q80VN9
D17511 BAA04463 Q05722
AK004383 BAB23281 Q9CT83
AK011547 BAB27690 Q9D0D2
AK017395 BAC25515 Q8CEP0
AK027947 BAC25677 Q8BT32
AK028339 BAC25891 Q9D0D2
AK031071 BAC27238 Q8BSQ4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col9a1 NP_031766 R.norvegicus Col9a1 305104   XP_223124 96
H.sapiens COL9A1 1297 Gene Info NP_001842 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)