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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Chtop, chromatin target of PRMT1
Sequence ID:NM_023215
Entrez Gene ID:66511
Ensembl ID:ENSMUSG00000001017

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3|3 F2

Chromosomal Position (from UCSC)

Chromosomal Position:3: 90498955 - 90509450

NM_023215 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
111509030287990304028
115112889030603790306174
128914759030701790307203
147629949031002990311547
299532479031311290313364

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9053323Full LengthBC144775RIKEN cDNA 2500003M10 gene
40129574Full LengthBC120651RIKEN cDNA 2500003M10 gene
5698038IncompleteBC083333RIKEN cDNA 2500003M10 gene
30243401IncompleteBC108396RIKEN cDNA 2500003M10 gene
30437762IncompleteBC066837RIKEN cDNA 2500003M10 gene

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_023215 NP_075704    

Related Sequences

 
mRNAGenPeptSwissProt
BC004582 AAH04582 Q99KL5
BC083333 AAH83333 Q9CY57
BC108396 AAI08397 Q2VPR3
BC120651 AAI20652 Q9CY57
BC144775 AAI44776 B7ZMS6
AB041654 BAA95102 Q9CY57
AK004558 BAB23371 Q9CY57
AK005377 BAB23984 Q9CY57
AK008885 BAB25951 Q9CY57
AK010866 BAB27232 Q9CY57
AK047914 BAC33189 Q9CY57
AK077960 BAC37084 Q9CY57
AK132769 BAE21348 Q9CY57
AK149010 BAE28718 Q9CY57
AK152492 BAE31263 Q9CY57

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus 2500003M10Rik NP_075704 R.norvegicus LOC500378 500378   XP_575736 100
H.sapiens CHTOP 26097 Gene Info NP_056422 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)