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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Snta1, Syntrophin, acidic 1
Sequence ID:NM_009228
Entrez Gene ID:20648
Ensembl ID:ENSMUSG00000027488

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 H1|2 84.0

Chromosomal Position (from UCSC)

Chromosomal Position:2: 154376329 - 154408084

NM_009228 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1595154202049154202643
596783154202742154202929
784980154203743154203939
9811111154206409154206539
11121319154206646154206853
13201524154209515154209719
15251710154229457154229642
17112115154233415154233819

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3674921Full LengthBC018546syntrophin, acidic 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033254  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009228 NP_033254 Q61234 PH
PDZ

Related Sequences

 
mRNAGenPeptSwissProt
U00677 AAC52119 Q61234
BC018546 AAH18546 Q61234
AK137379 BAE23334 Q3UVD6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Snta1 NP_033254 R.norvegicus Snta1 362242   NP_001094371 97
H.sapiens SNTA1 6640 Gene Info NP_003089 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)